Error In Batch Mode Run Prodigle
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10.5 years ago
HG ★ 1.2k

Hi Everyone i am trying to run prodigal in batch mode for 50genome. I want after each run the two out put file name according to input file name. I am doing like this but its not renaming. Please help me out.

# Predicted gene
    for file in ./*.fasta
        do
        echo $file 
        ./prodigal.v2_60.linux -a out_trans -d out_nuc -i $file
         mv out_trans $file_trans
         mv out_nuc $file_nuc
        done
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I've answered in another thread, should be "$file"_trans and "$file"_nuc

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Thank you so much.

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