Hi Everyone i am trying to run prodigal in batch mode for 50genome. I want after each run the two out put file name according to input file name. I am doing like this but its not renaming. Please help me out.
# Predicted gene for file in ./*.fasta do echo $file ./prodigal.v2_60.linux -a out_trans -d out_nuc -i $file mv out_trans $file_trans mv out_nuc $file_nuc done