Alternative Visualisation Tools To Bar Charts For 16S Sequencing Data
3
0
Entering edit mode
7.9 years ago

Hi everyone,

I'm looking for a better way to create figures representing the different phyla in my samples other than simple excel bar charts. I've tried looking for software online but so far have come across mainly genome analysis tools. Could anyone suggest some?

Thanks for your help! Angharad

• 2.5k views
ADD COMMENT
0
Entering edit mode
7.9 years ago
cts ★ 1.7k

Krona produces very attractive visualisations of taxonomic data

ADD COMMENT
0
Entering edit mode
7.9 years ago
5heikki 10k

In case you have multiple samples and only want visualizations on higher levels of taxonomy (phylum, class, order), IMO heatmaps can't be beaten. For software, R, R-Studio and the always helpful R-Cookbook

ADD COMMENT
0
Entering edit mode
7.9 years ago
tommivat ▴ 250

GraPhlAn is a very nice tool developed in Harvard University School of Public Health. Unfortunately, it does not run online, but it is pretty easy to install and use via Python.

ADD COMMENT

Login before adding your answer.

Traffic: 1752 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6