About how many pass-filter reads would you normally expect to get from a single-end 36bp Illumina GA2 run? Ten million, twenty, forty? I know nothing is guaranteed, but I have a feeling the ten million my lab is currently getting is on the low end of the scale, and I'd like to see what other people consider to be a reasonable number.
(Apologies if this question isn't sufficiently bioinformatics-oriented, but I figured BioStar would at least have a lot of people who see this kind of data often!)
I think the question is perfectly fine, since the filtering is done using bioinformatics methods. Upvoted :-)
Good to know, thank you! :-)
@avilella Good to know, thank you! :-)