I'm using Bio::SearchIO to parse HMMER3 output.
I am able get the significance of each sequence (which is located in the table on top of the output) with
$hit->significance. I can also get the c-Evalue by using
$hsp->significance. However, the more informative number would be the i-Evalue (from the domain table) or best 1 domain Evalue (from the top table).
Is there a method to get either of the two e-values? I could not find anything in the documentation.