Transcription Factor Dna-Binding Sites
3
1
Entering edit mode
7.8 years ago
ddr.dnl ▴ 10

Is there a database with the transcription factor DNA-binding sites for the transcription factors in drosophila?

dna • 3.3k views
ADD COMMENT
3
Entering edit mode
7.8 years ago
UnivStudent ▴ 430

You could probably find some of the resources on the Fly Factor Survey website. Specifically with their Genome Surveyor and other linked tools.

ADD COMMENT
1
Entering edit mode
5.1 years ago
lsp03yjh ▴ 810

You can use ChIPBase database to discovering transcription factor binding motifs, profiles and targets from ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species(Human, Mouse, Fruitfly, Worm, A. Thaliana, Yeast, Rat, Zebrafish, X. tropicalis, Chicken).

ADD COMMENT
0
Entering edit mode
7.8 years ago
Sameet ▴ 300

Genomatix is a paid data-base that has this information. I believe there is a program called Match. The link provided points to a page that has the information about many programs. You need to register, and you can use the "free" version of the program on the website. If you need to do anything more you need subscription to Biobase or Genomatix.

ADD COMMENT

Login before adding your answer.

Traffic: 2500 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6