is the absolute value of `plink2.eigenvec.var` from `plink2 --pca biallelic-var-wts approx` a measure of how much each SNP drives PCS?
0
0
Entering edit mode
3.1 years ago
curious ▴ 750

I am trying to figure out which SNPs have the largest influence on sample separation This link seems to suggest that I can take the absolute value of *.eigenvec.var. Would the numeric value for each PC be the SNP that contributes the most to sample separation in that PC?

Thanks

plink • 457 views
ADD COMMENT

Login before adding your answer.

Traffic: 2562 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6