Where to download raw counts (RNAseq) and breakpoints coordinates (cancer related) for testing?

Question

[Lila M]

Hi all,

I need some data for testing. In fact what I need is a data set with breakpoints coordinates and the raw counts by patient cancer related) . Does anybody in here know a repository that have that information?

Thank you!

Answer 1

[Kevin Blighe]

Hi,

You could obtain the raw HT-Seq counts from Xena Browser. For breakpoints, you may need the original FASTQs or BAMs, unless some other group has already published this data. Previous question here: C: How to analyse number of breakpoints -TCGA data

Kevin