Question

Picrust2: High level of description

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3.5 years ago

Claire • 0

Hello all,

I did picrust2 tutorial and i had description for each KO and EC. My question is how can i get high level of description L2 or L3 of the KEGG hierarchy ? How can i swith from picrust2 result to use this function "categorize_by_function.py" ?

Best,

picrust picrust2 • 3.1k views

ADD COMMENT • link updated 23 months ago by lamo • 0 • written 3.5 years ago by Claire • 0

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Were you able to figure out this part? I am also confused in this, where can I find this information.

ADD REPLY • link 3.2 years ago by gtmbini • 0

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if you have reached to a solution or a work around please let us know

ADD REPLY • link 2.2 years ago by mamdouhmarwa • 0

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Yes, some how . still you have the problem ?

ADD REPLY • link 2.0 years ago by Claire • 0

score 0 · Answer 1 · 2021-03-26

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3.1 years ago

1731147b • 0

Hi! I have the same problem. There is any example? Thanks

ADD COMMENT • link 3.1 years ago by 1731147b • 0

score 0 · Answer 2 · 2021-12-02

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2.4 years ago

Giovy • 0

Hi, did you solve this?

ADD COMMENT • link 2.4 years ago by Giovy • 0

score 0 · Answer 3 · 2022-02-03

I can see that this command has been removed from the scripts in PICRUST2 (can't find it in the scripts folder in the GitHub project page) as for other scripts BUT they are in PICRUST1 I am waiting to find a solution if anyone got, or to correct me if I am wrong, otherwise, I will be waiting for the Github team to respond.

score 0 · Answer 4 · 2022-05-21

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23 months ago

lamo • 0

Try to refer to the discussion in the link below. https://github.com/gavinmdouglas/picrust2_manuscript/issues/1

The author provides R script to categorize to L3

ADD COMMENT • link 23 months ago by lamo • 0