How to create an heatmap of clusters obtained by degpatterns function?

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3.0 years ago

giuly.lg.95 • 0

I have an RNAseq to analyze. I analyzed the data with DESeq2 and then I performed the LRT test to perform some timecourse analysis and then, using degpatterns fuction, I obtained some clusters. How can i plot these clusters as heatmap, using the order of cell types? I tried with ComplexHeatmap package, but with no results useful...

R RNAseq degpatterns clusters DESeq2 • 1.3k views

ADD COMMENT • link updated 3.0 years ago by Ram 43k • written 3.0 years ago by giuly.lg.95 • 0

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Please share the code that you tried, and point out what didn't work.

ADD REPLY • link 3.0 years ago by Friederike 8.9k

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@giuly.lg.95 Why did you delete this post?

ADD REPLY • link 3.0 years ago by Ram 43k

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I'm sorry, I resolved the problem reading carefully the vignette. Thanks!

ADD REPLY • link 3.0 years ago by giuly.lg.95 • 0

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Please add an answer describing how you solved the problem, including any functions from the vignette that you used, so others can benefit from your work when they run into a similar problem.

ADD REPLY • link 3.0 years ago by Ram 43k

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