Hello I have been experienceing some issues while using binning tools, on the coverage estimation modules of the binning tools I have got 0% of coverage and the reason seems to be that BAM file's contigs IDs are not the same that the contigs IDs of my contigs.fasta file.
here are the contigs IDs on my bam files:
K00171:838:H25L5BBXX:6:1202:15179:21957 163 **k119_248961** K00171:838:H25L5BBXX:6:2102:14174:7767 163 **k119_248961**
and here are the contigs.fasta file's contigs IDs:
>c_000000000001 >c_000000000002 >c_000000000003
how can I deal with this? is there a option when using samtools that i can use to cope with this (or any tool option) ?