Find genomic coordinates for exons in historical transcripts
0
0
Entering edit mode
5 months ago

I'm working on a project where I need to reconstruct what version of a transcript was used to perform some initial analysis & annotation. I need to download the genomic coordinates for the exons in all of the different versions of a transcript.

For example for TP53 I need to get the exonic coordinates for NM_000546.6, NM_000546.5, .... , all the way through NM_000546.1

I know how to use UCSC or BioMart to get this data for the latest version of the transcript. I've started looking through NCBI's e-utils but not finding options for getting the genomic coordinates for the exons.

Any suggestions?

genome exon human coordinates • 155 views
ADD COMMENT

Login before adding your answer.

Traffic: 1666 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6