fastq-dump and fasterq-dump not working
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8 months ago

Hi,

I have downloaded the SRA data by using the prefetch command and it worked very well. Now, the next turn was to convert the SRA file to Fastq format. I used this command (fast-dump SRR10914109). It converted the SRA file into a Fastq file but not completely. I mean it just downloaded half portion of the whole SRA file into Fastq format.

This message appeared on-screen

fastq-dump.2.9.6 err: process canceled while executing process - failed SRR10914109.sra

I am trying different commands like fasterq-dump but the problem still persists. Its requested you, please inform me

fastq prefetch ncbi sratoolkit • 470 views
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Entering edit mode

Looks like you did everything right but not sure what the issue is.

Do yourself a favor and just grab the fastq files directly from EBI-ENA (Large file download -->. SRR10914109)

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