I am trying to find coverage for my exon.bed file. for this i have used bedtools by following code
bedtools bamtobed -i reads.bam | bedtools coverage -a exons.bed -b - > exons.bed.coverage
The exons.bed.coverage file has the following column .
As there are no headings for the columns i am having difficulty in understanding them. i know col A is chr number ,col B and C are start and end points and col E is gene name. but i do not understand what does colomn F,G,H and I are showing.
It would be really great if someone can tell me the header names so that in future i would do my work with understanding.
thanking in advance!