Entering edit mode
3.0 years ago
ebhmayra
•
0
Hi guys,
Can you please help me with this. I am working with trying to do:
vcf.fn <- "sequences_covid_SRA_april21_36genomes_sequence_aligned.trimmed.fasta.vcf"
snpgdsVCF2GDS(vcf.fn, "sarscov2.gds", method="biallelic.only")
and I got this error:
No sample in the VCF file!
Which could be the reasons for this error? I check the file and it seems ok. Thank you in advance.
what is the output of
If it is only
#CHROM POS ID REF ALT QUAL FILTER INFO
, then there is no sample in the vcf.What is the output to the shell command:
You'll need to have bcftools installed to run the above command. If it's not installed, give us the output to: