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2.1 years ago
MSRS ▴ 580
Hi everyone, We have illumina fastq files having target sequences (specific gene). We want to go for variant/SNP calling.
Helping with suggesting any types of pipeline/s tools will be highly appreciated.
What have you tried?
I have tried Snippy. But It can process single sample at a time.
What about samtools/bcftools/GATK?