Identifying Cells co-expressing a list of genes
1
1
Entering edit mode
5 days ago
Bio ▴ 10

Hello, I have a 10X single cell rna seq data set that I analyzed using cell ranger. I want to determine whether any of the cells I sequenced are expressing all of a list of genes. For example, does any one cell express nano, oct4, tfap2c, and SOX17.

I believe that I can do thin in Seurat using the output from the cell ranger analysis. Does anyone know a tutorial or have advice on where to start?

Co-expression seurat 10X RNA-seq single-cell • 92 views
ADD COMMENT

Login before adding your answer.

Traffic: 2772 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6