integrate two single cell datasets and use transfer learning approach using annotated cell atlas
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7 days ago
das2000sidd ▴ 30

Hi everyone, I am very frustrated with this and hence decided to reach out here. Does anyone have experience with scRNA seq where you use a pre annotated single cell atlas and integrate your data to look for similarities from cell type of pre annotated single cell atlas and the given data? There is a tool called scArches to do this but was wondering if somebody had worked on a similar problem and could just tools or pipelines to follow? Thanks so much!

scRNASeq machine_learning • 101 views
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7 days ago

You will likely be very interested in SingleR.

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Thanks so much for recommending this.

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