I am currently working on Singel cell RNAseq Tumor data, and I have around 15000 Tumor cells from 7 cancer patients. I am interested in looking into the expression pattern of genes in only tumour cells. I am sure the 15000 cells which we classified are not 100% tumour cells. So my question is, do we have any methods where we can extract only tumour cells. I tried Infercnv, Conics but I am not able to get only Tumor cell annotations. It would be great if you guys can help me in solving this issue.
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