I want to run masurca for 19 entries. However it gives me error like this if I want to run them in single config file. Error is;
" terminate called after throwing instance of 'std::runtime_error' what(): CAn't open 'quorum_mer_db.jf' for reading "
And my config file is;
DATA PE= a1 500 50 /mnt/14_1.fastq.gz /mnt/14_2.fastq.gz PE= a2 500 50 /mnt/15_1.fastq.gz /mnt/15_2.fastq.gz PE= a3 500 50 /mnt/19_1.fastq.gz /mnt/19_2.fastq.gz PE= a4 500 50 /mnt/21_1.fastq.gz /mnt/21_2.fastq.gz PE= a5 500 50 /mnt/26_1.fastq.gz /mnt/26_2.fastq.gz ... END PARAMETERS USE_LINKING_MATES = 1 NUM_THREADS = 15 JF_SIZE = 320000000 SOAP_ASSEMBLY=0 END
I tried with other JF size, but again did not work.
Do you know the solution? Thank you