Deleted:When to use majority rule (0.5) and strict (1.0) consensus tree search?

Question

[ddh8602]

I am using Prottest to select the best model of protein evolution to use in a Maximum Likelihood phylogenetic analysis. In Prottest I can set if I want to search the majority rule consensus tree (threshold = 0.5) or the strict consensus tree (threshold=1.0). I kind of understand that if I want to do bootstrapping in a ML analysis the best would be to use the majority rule consensus tree search but I don't understand the exact reason. I would appreciate if someone could clarify me with a simple scenario when to use each mode.