Combining results tables to plot automatecally
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27 days ago
hydrobeanz • 0

Hi every one. Is it ok to combine results names in order to print all result tables at once using for loop? I want to show all results tables with the differnt contrasts at once. I also want to plot many violin plots of plot count for single genes at once, instead of having to do plotCounts(dds, gene=which.min(res$padj), intgroup="condition") every time. Is this possible to automate? Thank You.

DESeq2 • 175 views
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Entering edit mode
27 days ago
swbarnes2 9.9k

You can do whatever you want.

You can't really combine the results objects, but if you make a data frame version of them, those can be manipulated. You'll probably want to change the column names, so you remember what results go with what contrasts.

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