Geno Ontology Analysis
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18 days ago
1961012 • 0

I did Gene ontology analysis of DEGs using R Bioconductor as following:

upBP_0.01= new("GOHyperGParams",
geneIds=selectgenesup,
universeGeneIds=universegenes,
annotation="org.Pf.plasmo.db",
ontology="BP",
pvalueCutoff=0.01,
conditional=FALSE,
testDirection="over")

upBP = hyperGTest(upBP_0.01)

summary(upBP)


and i got the output:



How can I get the list of genes in each GO term?

Is there any R script for this issue?

How can I visualize them if possible?

GO hypergtest • 175 views
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You forgot to mention you are using the GOstats package.

You can use the mapIds()` function from the AnnotationDbi package.

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