extract UTRs regions from gff file
1
0
Entering edit mode
3.3 years ago
Frieda ▴ 60

Hello,

I have a gff file with annotation for gene, mRNA, CDS, and transcript. Is there a way/tool to extract the UTRs regions from this gff file?

gff UTR • 1.4k views
ADD COMMENT
0
Entering edit mode

You can probably also download a specific table of all the of UTRs from the UCSC table browser

ADD REPLY
2
Entering edit mode
3.3 years ago
Juke34 8.6k

Extracting genomic feature sequences from GTF/GFF files with AGAT

You should provide the real feature name used in your gff file e.g. 5utr, "5'utr", five_prime_UTR, UTR, etc...

ADD COMMENT

Login before adding your answer.

Traffic: 3572 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6