Use shiny app (to obtain lethal recessive association test power) in Rstudio
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7 weeks ago
Floss • 0

I would like to use pageant to test many lethal SNPs. This is a candidate SNP association study.

A shiny app is available @ https://andrewhaoyu.shinyapps.io/PAGEANT/ but would really like to implement this in a pipeline rather than the UI because I have many variants to test.

Is this possible? If not, does anyone have a useful alternative package? The variants are rare lethal recessives.

SNPs power rstudio • 122 views
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You can send a email to the first author of the publication to see if they are willing to give you some hints or/and scripts.

It is not possible to get the coding lines running on the shiny server unless you have credentials to this specific shiny app.

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Thank you. You are right, I should cite the publication, it was this one; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925788/

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