I created an integrated seurat object. And I used SingleR to do the cell annotation and joined that information to the seurat object.
I'm now trying to find in which cells have certain gene present. I tried to extract the data slot from seurat object, then subset it based on the row names (genes), but that only gave me the barcode of genes but not associated with the real cell annotation.
So is there a way like built-in command in seurat allowing that?
Thanks so much!! Leran