How to connect HLA alleles with rsID?
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5 months ago
dec986 ▴ 300

I have a list of HLA alleles, but I need to get these IDs in rsID format, or at least the chromosome and position.

I've tried searching on SNP-DB and SNPedia, and old-fashioned internet search, but nothing is coming up.

PharmGKB doesn't show the necessary position or rsID.

How can I connect an HLA allele, for example HLA‐C*07:29 as an rsID or chromosome and position?

rsid • 436 views
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2
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5 months ago
curious ▴ 600

HLA are gene haplotypes as in defined by the thousands of nucleotides that constitute an HLA gene. I could see why they would not have rsids and positions like single nucleotide variants and short insertion deletions. Happy to be shown otherwise though I didnt research this at all

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5 months ago
Lemire ▴ 880

This post might help: Impute presence of HLA-B27 antigen in individual genome

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4 months ago
jr_ipd • 0

Take a look at this, which discusses HLA alleles and RSIDs, https://www.ebi.ac.uk/ipd/imgt/hla/help/genomics.html

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