How to get chromosomal position of list of RS number(GRCh38)?
1
0
Entering edit mode
17 months ago
yoosefyud ▴ 40

Hello I have got list of rs Ids in an excel file and I need to obtains their chromosomal position in Human (GRCh38). I will be so pleased if you help me with required codes or packages in R language. I also need to mention that I have little acquaintance with using R and its packages. Thanks a lot.

Here is an example:

rs2569190  5:140633331
Genome SNP GRCh38 Polymorphism • 580 views
ADD COMMENT
2
Entering edit mode
17 months ago
Emily 23k

You could try biomaRt, or the Ensembl REST API, which has an online training course in R.

ADD COMMENT
0
Entering edit mode

Thanks a lot Emily. Using biomart completely solved my problem.

ADD REPLY

Login before adding your answer.

Traffic: 1227 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6