Using nhmmer to identify gene members of a superfamily
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6 weeks ago

I'm trying to build a profile hmmer to identify 87 gene members of a superfamily. From the hmmer manual, they've mentioned to use MSA to build the profile. So I've used the nucleotide sequences of the 87 gene members to construct MSA and proceed by using this to build the profile. But output of nhmmer came out that they didnt mention whether the hits belongs to which particular genes so I can't actually identify my gene members. So I was wondering can someone help to point out where my issue is so that I can proceed to identify my gene members?

Thanks.

genes nhmmer profilehmmer hmmer • 56 views
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