Tool for list protein mutation sites from WT/variants sequences
0
0
Entering edit mode
3.0 years ago

Hello!

Anyone can help me please? Do you know a tool for map the mutations sites given a WT protein sequence and proteins variants?

For example:

wt.fasta (1 seq in fasta format):

>wt_protein_example
MAAAAAAAAAA ...

variants.fasta (in multifasta file format)

>Variant_1
MAAAAAAAAAA ...

>Variant_2
MATAAAAAAAA ...

>Variant_3
MAAAPAAAARG ...

And for each protein sequence in variants.fasta file get a table (.CSV, etc) of mutations like:

enter image description here

Properly, I have 1 WT seq of TEM-1 b-lactamase and ~300,000 protein variants generated mi error prone PCR

Mutations Protein • 523 views
ADD COMMENT

Login before adding your answer.

Traffic: 2972 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6