Is local ancestry inference usually run with a sequenced reference panel?
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3.0 years ago
boxate1618 ▴ 60

Most examples I see with rfmix usually reference using 1000 genomes as reference. Why not use something array based like HGDP? Is it because 1000 genomes is sequenced and thus more appropriate for the sub chromosome granularity of local ancestry inference?

rfmix ancestry • 520 views
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