How to create a MD plot (plotMD() function) using DESEq2 results?
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6 weeks ago
bio100 • 0

Hello. I want to create a MD plot (plotMD() function) using DESeq2 results. This function requires results from decideTestsDGE() function or similar (like decideTests()) as a "status" but I can't find such function in DESeq2. And should the "object" be the results from DESeq() function? Thank you for your help.

plotMD(object=?, status=? , ylab = "Expression log-ratio (this sample vs others)", main = colnames(object)[column])
deseq2 mdplot edger • 188 views
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6 weeks ago
ATpoint 50k
DESeq2::plotMA()
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I'm aware of this function, the thing is I'm using a few packages but I want plots in the same style.

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Which "few packages" and "style" do you mean? After all MA plots are just baseMean on log scale vs logFC.

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