Entering edit mode
2.9 years ago
bio100
•
0
Hello. I want to create a MD plot (plotMD() function) using DESeq2 results. This function requires results from decideTestsDGE() function or similar (like decideTests()) as a "status" but I can't find such function in DESeq2. And should the "object" be the results from DESeq() function? Thank you for your help.
plotMD(object=?, status=? , ylab = "Expression log-ratio (this sample vs others)", main = colnames(object)[column])
I'm aware of this function, the thing is I'm using a few packages but I want plots in the same style.
Which "few packages" and "style" do you mean? After all MA plots are just baseMean on log scale vs logFC.