How to do Microarray Metadata analysis using R
1
0
Entering edit mode
11 weeks ago
xxxxxxxx ▴ 20

I want to learn microarray metadata analysis using R. The tutorials that I am following all are for an older version of R. Where can get an R script for microarray metadata analysis which will work for the R version >= 4.0?

metadata R microarray packages rstudio • 336 views
ADD COMMENT
0
Entering edit mode
11 weeks ago

Which tutorials are you following? please link to them.

ADD COMMENT
0
Entering edit mode
ADD REPLY
0
Entering edit mode

I am not sure what is the issue. These should still work with R 4.0.x. In some cases, a package may be deprecated, in which case you just need to download the tar.gz of the final version [prior to deprecation] and then install this via install.packages()

ADD REPLY
0
Entering edit mode

yes I tried that but after running this-

shiny::runApp('metaOmics', port=9987, launch.browser=T)

getting error like this at the end-

 Output created: C:/Users/AppData/Local/Temp/RtmpK0rbpa/file2a2878225074.html

> shiny::runApp('metaOmics', port=9987, launch.browser=T)

Listening on http://127.0.0.1:9987
Warning: Error in get: object '%AND%' not found
  86: get
  85: :::
  80: directoryInput [global/directoryInput.R#73]
  73: setting_ui [ui/setting_ui.R#4]

It redirects to the browser which shows the error. Please find the attached screenshot.enter image description here

ADD REPLY
1
Entering edit mode

I would post this an an issue on the GitHub page: https://github.com/metaOmics/metaOmics

ADD REPLY

Login before adding your answer.

Traffic: 1874 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6