I have a subset of genes from a specific bacterial species genome. I wish to know whether these genes are enriched in in specific pathways/modules.
Is there any recommended tool for such task?
KEGG is a general answer to your question. You will probably want to use BlastKOALA first, and follow it with KEGG Mapper.
I have KO identifier for these genes and familiar with kegg mapper. But I'm actually looking for doing enrichment per pathways not just knowing to which pathways the genes are participate in...
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