basic pathways analysis - bacteria genome
1
0
Entering edit mode
5 months ago
biobiu ▴ 120

Hey,

I have a subset of genes from a specific bacterial species genome. I wish to know whether these genes are enriched in in specific pathways/modules. Is there any recommended tool for such task?

Thanks!

microbial pathway • 272 views
ADD COMMENT
0
Entering edit mode
5 months ago
Mensur Dlakic ★ 14k

KEGG is a general answer to your question. You will probably want to use BlastKOALA first, and follow it with KEGG Mapper.

ADD COMMENT
0
Entering edit mode

Thank you! I have KO identifier for these genes and familiar with kegg mapper. But I'm actually looking for doing enrichment per pathways not just knowing to which pathways the genes are participate in...

ADD REPLY

Login before adding your answer.

Traffic: 1968 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6