How use gprofiler2 ourput visulize in Cytosape
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4 weeks ago
BISEP • 0

Hello I have gprofiler2 output file I wanted visualize this in network manner using cytoscape, I know we can use enrichmentmap tool i am not able find how can I do it due to lack of proper documentation for the latest update of gprofiler2 any one help me and suggest me how can I do this generate cytoscape visualiztion thank you

GO pathway Cytoscape gprofiler2 • 151 views
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4 weeks ago
Scooter ▴ 80

The instructions for using enrichmentMap are here: https://enrichmentmap.readthedocs.io/en/latest/ It includes information about how to read in gProfiler results, I believe.

-- scooter

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@Scooter I have tried to load GMT file output but it giving me error

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