how to identify if a contig.fa file comes from IDBA or Spades?
1
0
Entering edit mode
6 weeks ago
leranwangcs ▴ 40

Hi,

Is there any ways that could identify if a contig.fa file comes from IBDA or spade? The header of the file looks like this:

contig.fa file header

Thanks in advance for any helps!

assembler • 196 views
ADD COMMENT
1
Entering edit mode
6 weeks ago
h.mon 33k

This probably is not a fool-proof way of identifying the origin of the assembler, as the output may have been modified afterwards, but this seems to be from IDBA, as it doesn't match the output from SPAdes:

>NODE_1_length_243990_cov_120.333010

Obviously, the proper way would be to ask the person who performed the analysis.

ADD COMMENT
0
Entering edit mode

Thanks so much! I have been looking around for the example header of outputs from these two softwares but no luck, glad you post this! The person who performed this analysis has left and could not remember which software she used, that's where does this question come from. Anyways thanks so much for this!

ADD REPLY

Login before adding your answer.

Traffic: 2521 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6