I am supposed to analyze some 10x chromium single cell gene expression data set in the future.
There will be plenty of time to familiarize with the task and to discuss the matter with experts in the field. I myself have years of experience in genomics/transcriptomics but not with single-cell expression data.
However, I need to evaluate the quality of the data and the amount of work needed for the task in the next days.
So what are the questions you would ask about a 10x chromium single cell gene expression data set before deciding if you take over the task and to see how much work it will be? What to consider?