how to find a threshold p value for eqtl analysis
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11 weeks ago
evafinegan • 0

Hello,

I am doing eqtl analysis using matrixeqtl package in R. I am using a pvalue of 0.05 in the analysis. But I was wondering if I should use a different threshold pvalue? If so, is there a way to calculate an appropriate threshold pvalue? Thank you for the help!

matrixeqtl • 129 views
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11 weeks ago
Zhenyu Zhang ▴ 420

normally ppl calculated empirical p-values with permutations.