Hi to all good Evening i am new to identifying haplotypes and analysis based on haplotypes. Now i have SNP genotyping data on my 150 lines with 3000 snps in this format.
SNP alleles chrom Pos IND1 IND2 IND3 IND4 IND5
SNP1 A/G 6 27936 AA AA AA AA AA
SNP2 T/C 6 37057 TT TT TT TT TT
SNP3 A/G 6 60790 AA AA AA AA AA
SNP4 C/T 6 79641 CC CC CC CC CC
Now i would like to haplotypes from the above data. i would like to request you all to share your expertise in this analysis like any softwares, R packages etc to do this analysis. any help in this regard will be highly appreciated Regards