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2.9 years ago
guitarlplay
•
0
Hi guys,
I am working with the prepackaged data within the reactomePA package for gene enrichment analysis. I am comparing the results for a given list between the main Reactome website and using reactomePA in R. The hits within pathways are similar but not identical. My question is how I would go about finding which version of the Reactome Data is used within the package.
Thanks in advance.
Hi, in facts, I meet the same problem. When I used my gene set list, I found the results from ReactomePA package in clusterProfiler is similar to that in ReactomeFIPlugIn in cytoscape. However, the results from Reactome website (https://reactome.org/) are different from the above two.
Have you fix this problem? This question has bothered me for about two years! I speculate that the Reactome database may not be updated for a long time in R/cytoscape. And, it is updated every 3 months in the main Reactome website. Thanks! Carrie Chen E-mail: chjndyx@163.com
thanks you very much!