I'm working on a scRNA-seq project using publicly available data in ScanPy. I am stuck on, I guess, a QC step of filtering out cells. These scatter plots were generated.
I'm having trouble interpreting why there's two bunches of cells in the bottom graph? Especially the bottom bunch with low n_gene_by_counts and higher total_count? Anyone have a clue or idea what they could be? or how to look into them further? Help, please?
Could someone explain how to interpret these graphs, please?