IGV not showing transcripts
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10 weeks ago
shaden • 0

Hi, I have recently started using IGV and I have loaded the human (hg38) genome from their server. I am trying to view a gene that has 9 transcripts according to Ensembl, but IGV is showing 1 only even when I click expanded it doesn't show the transcripts. Any suggestions?
Thanks!

transcripts IGV • 200 views
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10 weeks ago
ATpoint 52k

Probably RefSeq is shown, which is the default. You would need to download an Ensembl reference and load it. A GTF file unless something can be downloaded directly via File -> Load From Server.

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