How to plot LD decay per chromosome

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2.9 years ago

Curls ▴ 40

Hi all,

I am trying to plot one population LD decay showing multiple chromosomes separately. I did calculations in TASSEL and uploaded the results in R.

Here is the plot that I want to create with my data.

enter image description here

Could you please share with me if you have a R script to make this plot?

Thanks

LDdecayplot LDdecay • 988 views

ADD COMMENT • link updated 2.9 years ago by natasha.sernova ★ 4.0k • written 2.9 years ago by Curls ▴ 40

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Hi, Curls, I am not sure anybody will share with you his own data, but it looks easy to find something useful in the net: https://scholar.google.ru/scholar?hl=ru&as_sdt=0%2C5&q=LDdecay+plot&btnG=

just go to scholar.google and type: "LDdecay plot"

If you find a plot you like you can send a message to the article' authors, they may share their script or old data...

Natalia Sernova

ADD REPLY • link 2.9 years ago by natasha.sernova ★ 4.0k

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