I plan to check a lncRNA expression level in RNAseq dataset, but the lncRNA was just identified and not annotated yet.Only I know is its position in chromatin and the sequence of it. so how can I perform the RNAseq analysis to check its expression level? Thanks
What does that mean? Do you know its location in the reference genome or you don't?
Yes. I know its location in the reference genome.thanks!
Already got it solved! thank you all.
could you explain how you solved it