Heatmap from the coverage
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9 weeks ago

Hello everyone

I am trying to plot heatmap based on the coverage information. The coverage was computed for the transposons and the genomic co-ordinates using the bedtools. Now I would to plot the heatmap to show the enrichment associated with the region. I would like to have suggestions for the tools to plot the heatmap.

Thank you so much.

transposons • 166 views
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If you want to combine in a single plot annotation tracks and coverage karyoploter might be your best choice, otherwise, if you just want to visualize it, you can use IGV, you have the option to visualize coverage as a heatmap.

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Thank you so much for your response. I will implement the tools being mentioned.

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