What is the x-axis in ridgeplot produced by enrichplot package?
1
0
Entering edit mode
4 months ago

I used clusterProfiler to perform GSEA, using log2 fold changes for my genesList. I then visualized the GSEA result, using the ridgeplot function from enrichplot, but am not sure what units the x-axis is in. Is the x-axis log2 fold change?

ridgeplot enrichplot clusterProfiler gsea • 272 views
ADD COMMENT
3
Entering edit mode
4 months ago

The enrichPlot docs are a little vague, but I think it's summarizing the "core enriched" (which I'm guessing are akin to "leading edge") genes for each gene set via (log2?) fold-change, so yes, I expect you are correct.

The dev hangs around the site too, so they may come and confirm (or correct) in time.

ADD COMMENT

Login before adding your answer.

Traffic: 1975 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6