The accession number of generated consensus sequence and reference sequence
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18 months ago
mngpn • 0

I was using samtools, bcftools, vcfutil.pl and seqtk to generate consensus sequences from some raw SARS-CoV-2 fastq data, but I do not know why the sample identifier in the generated consensus sequence was exactly the same as the reference sequence (NC_045512.2). Is there any solution to that?

generation consensus sequence • 351 views
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