Comparison of Bisulfite sequencing results with Methylkit and edgeR
Entering edit mode
2.3 years ago
iraia.munoa ▴ 130

Hi everybody, I have been trying different tools to analyse the differentially methyted cytosines in bisulfite sequencing samples (control vs treatment). I have used on one hand Methylkit tool and have obtained %of differentially methilated cytosines. On the other hand, I have used edgeR and have obtained fold change values for differentially methylated cytosines. Now I wold like to compare both results and see which cytosines have been identified with both tools, comparing if their values are similar. How can I compare %methylation values (methylkit) and fold change values (edgeR), without adding any type of error? Thanks in advance, Iraia

edgeR sequencing Bisulfite methylkit • 490 views

Login before adding your answer.

Traffic: 1334 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6