Comparison of Bisulfite sequencing results with Methylkit and edgeR
0
1
Entering edit mode
5 months ago
iraia.munoa ▴ 130

Hi everybody, I have been trying different tools to analyse the differentially methyted cytosines in bisulfite sequencing samples (control vs treatment). I have used on one hand Methylkit tool and have obtained %of differentially methilated cytosines. On the other hand, I have used edgeR and have obtained fold change values for differentially methylated cytosines. Now I wold like to compare both results and see which cytosines have been identified with both tools, comparing if their values are similar. How can I compare %methylation values (methylkit) and fold change values (edgeR), without adding any type of error? Thanks in advance, Iraia

edgeR sequencing Bisulfite methylkit • 137 views
ADD COMMENT

Login before adding your answer.

Traffic: 2705 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6