Question

Extract chromosome 1 - 22 ,X and Y from BAM file

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2.9 years ago

shubhamkumbhar420 ▴ 10

Hello there,

I have a BAM file of size 8 GB. I am trying to extract reads from Chr1-22 and X, Y respectively. How can I do that?

Thank you!!!

NGS • 2.7k views

ADD COMMENT • link updated 2.9 years ago by Jorge Amigo 14k • written 2.9 years ago by shubhamkumbhar420 ▴ 10

score 1 · Answer 1 · 2021-06-02

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2.9 years ago

Pierre Lindenbaum 161k

ADD COMMENT • link 2.9 years ago by Pierre Lindenbaum 161k

score 1 · Answer 2 · 2021-06-02

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2.9 years ago

Jorge Amigo 14k

ADD COMMENT • link 2.9 years ago by Jorge Amigo 14k